Package: mecoturn 0.3.1

mecoturn: Decipher Microbial Turnover along a Gradient

Two pipelines are provided to study microbial turnover along a gradient, including the beta diversity and microbial abundance change. The 'betaturn' class consists of the steps of community dissimilarity matrix generation, matrix conversion, differential test and visualization. The workflow of 'taxaturn' class includes the taxonomic abundance calculation, abundance transformation, abundance change summary, statistical analysis and visualization. Multiple statistical approaches can contribute to the analysis of microbial turnover.

Authors:Chi Liu [aut, cre], Xiangzhen Li [ctb], Minjie Yao [ctb]

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mecoturn.pdf |mecoturn.html✨
mecoturn/json (API)

Peer review:

Bug tracker:https://github.com/chiliubio/mecoturn/issues

On CRAN:

2 exports 1 stars 0.94 score 107 dependencies 3 scripts 340 downloads

Last updated 14 days agofrom:beb72d73ee. Checks:OK: 1 NOTE: 6. Indexed: yes.

Exports:betaturntaxaturn

Dependencies:abindapebackportsbetaregbootbroomcarcarDatacliclueclustercodetoolscolorspacecorrplotcowplotcpp11data.tableDerivdigestdirmultdoBydplyrfansifarverfBasicsflexmixforeachFormulagenericsggplot2ggpubrggrepelggsciggsignifglmmTMBgluegridExtragssgtableGUniFracigraphinlineisobanditeratorslabelinglatticelifecyclelme4lmerTestlmtestmagrittrMASSMatrixMatrixModelsmatrixStatsmgcvmicrobenchmarkmicroecominqamodeestmodelrmodeltoolsmunsellnlmenloptrnnetnumDerivpbkrtestpermutepillarpkgconfigplyrpolynompurrrquantregR6RColorBrewerRcppRcppEigenreshape2rlangrmutilrpartrstatixsandwichscalesSparseMspatialstablestablediststatipstatmodstringistringrsurvivaltibbletidyrtidyselecttimeDatetimeSeriesTMButf8vctrsveganviridisLitewithrzoo