Package: mecoturn
Type: Package
Title: Decipher Microbial Turnover along a Gradient
Version: 0.3.2
Authors@R: c(person("Chi", "Liu", role = c("aut", "cre"), email = "liuchi0426@126.com"),
              person("Xiangzhen", "Li", role = "ctb", email = "lixz@cib.ac.cn"),
              person("Minjie", "Yao", role = "ctb", email = "yaomj@fafu.edu.cn")
			  )
Author: Chi Liu [aut, cre], Xiangzhen Li [ctb], Minjie Yao [ctb]
Maintainer: Chi Liu <liuchi0426@126.com>
Description: Two pipelines are provided to study microbial turnover
        along a gradient, including the beta diversity and microbial
        abundance change. The 'betaturn' class consists of the steps of
        community dissimilarity matrix generation, matrix conversion,
        differential test and visualization. The workflow of 'taxaturn'
        class includes the taxonomic abundance calculation, abundance
        transformation, abundance change summary, statistical analysis
        and visualization. Multiple statistical approaches can
        contribute to the analysis of microbial turnover.
URL: https://github.com/ChiLiubio/mecoturn
Depends: R (>= 3.5.0)
Imports: R6, ggplot2 (>= 3.4.0), microeco (>= 0.20.0), GUniFrac,
        magrittr, ggpubr, lmerTest, betareg, glmmTMB
Suggests: ape, agricolae
License: GPL-3
LazyData: true
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2026-06-17 15:15:27 UTC; root
RoxygenNote: 7.3.2
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libxml2-dev
Repository: https://chiliubio.r-universe.dev
Date/Publication: 2026-02-24 12:58:32 UTC
RemoteUrl: https://github.com/chiliubio/mecoturn
RemoteRef: HEAD
RemoteSha: 0512caaa60a7d6b7016c99b705151af87e07a0da