Package: file2meco 0.9.2

file2meco: Transform Files to 'microtable' Object with 'microeco' Package

Transform output files of some tools to the 'microtable' object of 'microtable' class in 'microeco' package. The 'microtable' class is the basic class in 'microeco' package and is necessary for the downstream microbial community data analysis.

Authors:Chi Liu [aut, cre]

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file2meco.pdf |file2meco.html
file2meco/json (API)

# Install 'file2meco' in R:
install.packages('file2meco', repos = c('https://chiliubio.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/chiliubio/file2meco/issues

Datasets:

On CRAN:

5.88 score 22 stars 57 scripts 1.2k downloads 11 exports 51 dependencies

Last updated 3 days agofrom:336b30a2e3. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 19 2024
R-4.5-winNOTENov 19 2024
R-4.5-linuxNOTENov 19 2024
R-4.4-winNOTENov 19 2024
R-4.4-macNOTENov 19 2024
R-4.3-winNOTENov 19 2024
R-4.3-macNOTENov 19 2024

Exports:humann2mecomeco2phyloseqmeco2tsemetacyc_pathway_websitempa2meconcyc2mecophyloseq2mecoqiime1mecoqiime2mecotse2mecovs2meco

Dependencies:apecliclustercolorspacecpp11data.tabledigestdplyrfansifarvergenericsggplot2gluegtableigraphisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmicroecomunsellnlmepermutepillarpkgconfigplyrpurrrR6RColorBrewerRcppreshape2rhdf5rhdf5filtersRhdf5librlangscalesstringistringrtibbletidyrtidyselectutf8vctrsveganviridisLitewithryaml