Package: microeco
Type: Package
Title: Microbial Community Ecology Data Analysis
Version: 2.4.1
Authors@R: c(person("Chi", "Liu", role = c("aut", "cre"), email = "liuchi0426@126.com"),
              person("Felipe", "R. P. Mansoldo", role = "ctb", email = "mansoldo@micro.ufrj.br"),
              person("Minjie", "Yao", role = "ctb", email = "yaomj@fafu.edu.cn"),
              person("Xiangzhen", "Li", role = "ctb", email = "lixz@fafu.edu.cn")
			  )
Author: Chi Liu [aut, cre], Felipe R. P. Mansoldo [ctb], Minjie Yao
        [ctb], Xiangzhen Li [ctb]
Maintainer: Chi Liu <liuchi0426@126.com>
Description: A series of data analysis approaches for microbiome data
        based on the R6 class. The classes are designed for data
        preprocessing, niche analysis, taxonomic abundance plot, alpha
        diversity analysis, beta diversity analysis, differential
        abundance test, null model analysis, network analysis, machine
        learning, environmental data analysis, functional redundancy
        analysis, metabolites analysis, etc.
URL: https://github.com/ChiLiubio/microeco
Depends: R (>= 3.5.0), ggplot2 (>= 3.5.0)
Imports: R6, stats, ape, vegan, rlang, data.table, magrittr, dplyr,
        tibble, scales, grid, RColorBrewer, reshape2, igraph (>=
        2.0.0), lifecycle, withr
Suggests: GUniFrac, MASS, ggpubr, randomForest, ggdendro, ggrepel,
        agricolae, gridExtra, picante, pheatmap, mice, GGally
License: GPL-3
LazyData: true
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2026-09-30 14:20:06 UTC; root
RoxygenNote: 7.3.3
Config/pak/sysreqs: libglpk-dev libicu-dev libxml2-dev
Repository: https://chiliubio.r-universe.dev
Date/Publication: 2026-09-30 07:22:10 UTC
RemoteUrl: https://github.com/chiliubio/microeco
RemoteRef: HEAD
RemoteSha: 63565a1c88c4dbe978e455a8baea17123a014bb4