Package: microeco
Type: Package
Title: Microbial Community Ecology Data Analysis
Version: 2.3.0
Authors@R: c(person("Chi", "Liu", role = c("aut", "cre"), email = "liuchi0426@126.com"),
              person("Felipe", "R. P. Mansoldo", role = "ctb", email = "mansoldo@micro.ufrj.br"),
              person("Minjie", "Yao", role = "ctb", email = "yaomj@fafu.edu.cn"),
              person("Xiangzhen", "Li", role = "ctb", email = "lixz@cib.ac.cn")
			  )
Author: Chi Liu [aut, cre], Felipe R. P. Mansoldo [ctb], Minjie Yao
        [ctb], Xiangzhen Li [ctb]
Maintainer: Chi Liu <liuchi0426@126.com>
Description: A series of data analysis approaches for microbiome data
        based on the R6 class. The classes are designed for data
        preprocessing, taxa abundance plotting, alpha diversity
        analysis, beta diversity analysis, differential abundance test,
        null model analysis, network analysis, machine learning,
        environmental data analysis and functional analysis.
URL: https://github.com/ChiLiubio/microeco
Depends: R (>= 3.5.0), ggplot2 (>= 3.5.0)
Imports: R6, stats, ape, vegan, rlang, data.table, magrittr, dplyr,
        tibble, scales, grid, RColorBrewer, reshape2, igraph (>=
        2.0.0), lifecycle
Suggests: GUniFrac, MASS, ggpubr, randomForest, ggdendro, ggrepel,
        agricolae, gridExtra, picante, pheatmap, rgexf, mice, GGally
License: GPL-3
LazyData: true
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2026-06-29 10:39:51 UTC; root
RoxygenNote: 7.3.3
Config/pak/sysreqs: libglpk-dev libicu-dev libxml2-dev
Repository: https://chiliubio.r-universe.dev
Date/Publication: 2026-06-29 07:31:50 UTC
RemoteUrl: https://github.com/chiliubio/microeco
RemoteRef: HEAD
RemoteSha: edb2e55b0c2901dd39d6dbc5db5e91490db12cd7